Network Biology

• Topics for module
  • Software to install Cytoscape. A new version of Cytoscape 3.10.2 has just been released within the past couple of days. Please make sure that the students install this one — there is a very annoying bug in 3.10.1 related to installing / updating apps, which has been fixed in this release!
  • Quality assessment and heterogeneous data integration
  • Biomedical text mining (named entity recognition & co-occurrence analysis)
  • Network analysis with STRING and Cytoscape
• To read: Nothing
• Slides
• Code from the exercises

Exercises

Can be found at

• https://jensenlab.org/training/string/
• https://jensenlab.org/training/stringapp/

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Claus Ekstrøm 2024